Thalamus Benchmark


We are hosting an open benchmark with a large preprocessed publicly available dataset that includes co-registered T1-weighted and dMRI, manual thalamic masks, masks generated by three distinct automated methods, and a STAPLE consensus of the masks. A baseline code and environment can be found on The benchmark results will be presented as a leaderboard.


Aiming to encourage new methods' development, we present here a leaderboard for any researcher that wishes to apply. We evaluate four metrics:

  • Dice Coefficient

  • Average Hausdorff Distance


If you wish to have your team on our leaderboard, please submit your segmentation result on the test set as .nii or .nii.gz files on a compacted folder for

Data available on the Download section